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  • Home
  • Research & Softwares
  • Publications
  • Collaborators and Friends
  • Present Group, Visitors and Alumni
  • Contact

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Targeting RNA with small molecules using state-of-the-art methods provides highly predictive affinities of riboswitch inhibitors

1 month ago 1 month agoJean-Philip Piquemalnews

Check our new paper published in Communications Biology: Targeting RNA with Small Molecules using State-of-the-Art Methods Provides Highly Predictive Affinities of Riboswitch Inhibitors. N. Ansari, C. Liu, F. Hédin, J....

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Greedy gradient-free adaptive variational quantum algorithms on a noisy intermediate scale quantum computer

6 months ago 5 months agoJean-Philip Piquemalnews

Check our new paper published in Scientific Reports: Greedy Gradient-free Adaptive Variational Quantum Algorithms on a Noisy Intermediate Scale Quantum Computer C. Feniou, M. Hassan, B. Claudon, A. Courtat, O....

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VTX: Real-time high-performance molecular structure and dynamics visualization software.

6 months agoJean-Philip Piquemalnews

Check this new paper published in Bioinformatics: VTX: Real-time high-performance molecular structure and dynamics visualization software. M. Maria, S. Guionnière, N. Dacquay, C. Plateau–Holleville, V. Guillaume, V. Larroque, J. Lardé,...

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Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces and Path Integrals .

6 months ago 6 months agoJean-Philip Piquemalnews

Check this second preprint related to the FeNNix-Bio1 foundation machine learning model: Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces and Path Integrals ....

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A Foundation Model for Accurate Atomistic Simulations in Drug Design

6 months agoJean-Philip Piquemalnews

Check this new important preprint (ChemRXiv) introducing the FeNNix-Bio1 foundation machine learning model: A Foundation Model for Accurate Atomistic Simulations in Drug Design. T. Plé, O. Adjoua, A. Benali, E. Posenitskiy,...

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Lambda-ABF-OPES: Faster Convergence with High Accuracy in Alchemical Free Energy Calculations

6 months agoJean-Philip Piquemalnews

Check our new paper in the Journal of Physical Chemistry Letters: Lambda-ABF-OPES: Faster Convergence with High Accuracy in Alchemical Free Energy Calculations. N. Ansari, F. Jing , A. Gagelin, F....

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AMOEBA Polarizable Molecular Dynamics Simulations of Guanine Quadruplexes: from the c-Kit Proto-oncogene to HIV-1

6 months ago 6 months agoJean-Philip Piquemalnews

Check our new paper in the Journal of Chemical Information and Modeling: AMOEBA Polarizable Molecular Dynamics Simulations of Guanine Quadruplexes: from the c-Kit Proto-oncogene to HIV-1. D. S. El Ahdab,...

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The need to implement FAIR principles in biomolecular simulations

7 months agoJean-Philip Piquemalnews

Check our new paper in Nature Methods: The need to implement FAIR principles in biomolecular simulations Rommie Amaro, Johan Åqvist, Ivet Bahar, Federica Battistini, Adam Bellaiche, Daniel Beltran, Philip C...

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Histidine 73 methylation coordinates beta-actin plasticity in response to key environmental factors.

8 months agoJean-Philip Piquemalnews

Check our new paper in Nature Communications: Histidine 73 methylation coordinates beta-actin plasticity in response to key environmental factors. A. Schahl, L. Lagardère, B. Walker, P. Ren, A. Jégoud, M....

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Velocity Jumps for Molecular Dynamics

8 months ago 8 months agoJean-Philip Piquemalnews

Check our new paper in the Journal of Chemical Theory and Computation: Velocity Jumps for Molecular Dynamics . N. Gouraud, L. Lagardère, O. Adjoua, T. Plé, P. Monmarché, J-P. Piquemal,...

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Recent Posts

  • Targeting RNA with small molecules using state-of-the-art methods provides highly predictive affinities of riboswitch inhibitors
  • Greedy gradient-free adaptive variational quantum algorithms on a noisy intermediate scale quantum computer
  • VTX: Real-time high-performance molecular structure and dynamics visualization software.
  • Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces and Path Integrals .
  • A Foundation Model for Accurate Atomistic Simulations in Drug Design

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    Jean-Philip Piquemal - Sorbonne Université, Laboratoire de Chimie Théorique, UMR 7616 CNRS, CC137, 4 Place Jussieu, Tour 12-13, 4ème étage, 75252 Paris Cedex 05, France. E-mail: jean-philip.piquemal at sorbonne-universite.fr Tel : (+33) 1.44.27.25.04